Publications

Here we list all publications related to the field of genetic diversity in planktonic foraminifera. A large portion of the PFR² data is associated with one or more of these publications. Also listed are all publications, as far as known to us, making use of PFR². If your publication is not included, please let us know.

André, A., Quillévéré, F., Morard, R., Ujiié, Y., Escarguel, G., de Vargas, C., de Garidel-Thoron, T., Douady, C.J., 2014. SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications. PLoS One 9, e104641. doi:10.1371/journal.pone.0104641

André, A., Weiner, A., Quillévéré, F., Aurahs, R., Morard, R., Douady, C.J., Garidel-Thoron, T. de, Escarguel, G., Vargas, C. de, Kucera, M., 2013. The cryptic and the apparent reversed : lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer. Paleobiology 39, 21–39.

Aurahs, R., Göker, M., Grimm, G.W., Hemleben, V., Hemleben, C., Schiebel, R., Kucera, M., 2009a. Using the Multiple Analysis Approach to Reconstruct Phylogenetic Relationships among Planktonic Foraminifera from Highly Divergent and Length-polymorphic SSU rDNA Sequences. Bioinform. Biol. Insights 3, 155–177.

Aurahs, R., Grimm, G.W., Hemleben, V., Hemleben, C., Kucera, M., 2009b. Geographical distribution of cryptic genetic types in the planktonic foraminifer Globigerinoides ruber. Mol. Ecol. 18, 1692–1706. doi:10.1111/j.1365-294X.2009.04136.x

Aurahs, R., Treis, Y., Darling, K., Kucera, M., 2011. A revised taxonomic and phylogenetic concept for the planktonic foraminifer species Globigerinoides ruber based on molecular and morphometric evidence. Mar. Micropaleontol. 79, 1–14. doi:10.1016/j.marmicro.2010.12.001

Darling, K.F., Wade, C.M., Stewart, I. a, Kroon, D., Dingle, R., Brown, a J., 2000. Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers. Nature 405, 43–7. doi:10.1038/35011002

Darling, K.F., Kroon, D., Wade, C.M., Leigh, J., 1996. Molecular Phylogeny of the planktic foraminifera. J. Foraminifer. Res. 26, 324–330.

Darling, K.F., Wade, C.M., Kroon, D., Brown, A.J.L., 1997. Planktic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa. Mar. Micropaleontol. 30, 251–266.

Darling, K.F., 2003. Seasonal distribution of genetic types of planktonic foraminifer morphospecies in the Santa Barbara Channel and its paleoceanographic implications. Paleoceanography 18, n/a–n/a. doi:10.1029/2001PA000723

Darling, K.F., Kucera, M., Pudsey, C.J., Wade, C.M., 2004. Molecular evidence links cryptic diversification in polar planktonic protists to Quaternary climate dynamics. Proc. Natl. Acad. Sci. U. S. A. 101, 7657–62. doi:10.1073/pnas.0402401101

Darling, K.F., Kucera, M., Kroon, D., Wade, C.M., 2006. A resolution for the coiling direction paradox in Neogloboquadrina pachyderma. Paleoceanography 21, PA2011. doi:10.1029/2005PA001189

Darling, K.F., Kucera, M., Wade, C.M., 2007. Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist. Proc. Natl. Acad. Sci. U. S. A. 104, 5002–7. doi:10.1073/pnas.0700520104

Darling, K.F., Wade, C.M., 2008. The genetic diversity of planktic foraminifera and the global distribution of ribosomal RNA genotypes. Mar. Micropaleontol. 67, 216–238. doi:10.1016/j.marmicro.2008.01.009

Darling, K.F., Thomas, E., Kasemann, S. a, Seears, H. a, Smart, C.W., Wade, C.M., 2009. Surviving mass extinction by bridging the benthic/planktic divide. Proc. Natl. Acad. Sci. U. S. A. 106, 12629–33. doi:10.1073/pnas.0902827106

de Vargas, C., Zaninetti, L., Hilbrecht, H., Pawlowski, J., 1997. Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record. J. Mol. Evol. 45, 285–294.

de Vargas, C., Pawlowski, J., 1998. Molecular versus taxonomic rates of evolution in planktonic foraminifera. Mol. Phylogenet. Evol. 9, 463–469.

de Vargas, C., Norris, R., Zaninetti, L., Gibb, S.W., Pawlowski, J., 1999. Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces. Proc. Natl. Acad. Sci. U. S. A. 96, 2864–2868. doi:10.1073/pnas.96.6.2864

de Vargas, C., Renaud, S., Hilbrecht, H., Pawlowski, J., 2001. Pleistocene adaptive radiation in Globorotalia truncatulinoides : genetic , morphologic , and environmental evidence 27, 104–125.

de Vargas, C., Bonzon, M., Rees, N.W., Pawlowski, J., Zaninetti, L., 2002. A molecular approach to biodiversity and biogeography in the planktonic foraminifer Globigerinella siphonifera (d’Orbigny). Mar. Micropaleontol. 45, 101–116.

Morard, R., Quillévéré, F., Escarguel, G., Ujiie, Y., de Garidel-Thoron, T., Norris, R.D., de Vargas, C., 2009. Morphological recognition of cryptic species in the planktonic foraminifer Orbulina universa. Mar. Micropaleontol. 71, 148–165. doi:10.1016/j.marmicro.2009.03.001

Morard, R., Quillévéré, F., Douady, C.J., de Vargas, C., de Garidel-Thoron, T., Escarguel, G., 2011. Worldwide genotyping in the planktonic foraminifer globoconella inflata: Implications for life history and paleoceanography. PLoS One 6, e26665. doi:10.1371/journal.pone.0026665

Morard, R., Quillévéré, F., Escarguel, G., Garidel-thoron, T. De, 2013. Ecological modeling of the temperature dependence of cryptic species of planktonic Foraminifera in the Southern Hemisphere. Palaeogeogr. Palaeoclimatol. Palaeoecol. 391, 13–33.

Quillévéré, F., Morard, R., Escarguel, G., Douady, C.J., Ujiié, Y., de Garidel-Thoron, T., de Vargas, C., 2013. Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides: A perspective on the morphological species concept in planktonic foraminifera. Palaeogeogr. Palaeoclimatol. Palaeoecol. 391, 2–12. doi:10.1016/j.palaeo.2011.03.013

Ujiié, Y., Lippsl, J.H., 2009. Cryptic diversity in planktonic foraminifera in the northwest Pacific ocean. J. Foraminifer. Res. 39, 145–154.

Ujiié, Y., de Garidel-Thoron, T., Watanabe, S., Wiebe, P., de Vargas, C., 2010. Coiling dimorphism within a genetic type of the planktonic foraminifer Globorotalia truncatulinoides. Mar. Micropaleontol. 77, 145–153. doi:10.1016/j.marmicro.2010.09.001

Ujiié, Y., Asami, T., de Garidel-Thoron, T., Liu, H., Ishitani, Y., de Vargas, C., 2012. Longitudinal differentiation among pelagic populations in a planktic foraminifer. Ecol. Evol. 2, 1725–37. doi:10.1002/ece3.286

Seears, H. a, Darling, K.F., Wade, C.M., 2012. Ecological partitioning and diversity in tropical planktonic foraminifera. BMC Evol. Biol. 12, 54. doi:10.1186/1471-2148-12-54

Weiner, A., Aurahs, R., Kurasawa, A., Kitazato, H., Kucera, M., 2012. Vertical niche partitioning between cryptic sibling species of a cosmopolitan marine planktonic protist. Mol. Ecol. 21, 4063–73. doi:10.1111/j.1365-294X.2012.05686.x

Weiner, A.K.M., Weinkauf, M.F.G., Kurasawa, A., Darling, K.F., Kucera, M., Grimm, G.W., 2014. Phylogeography of the tropical planktonic foraminifera lineage globigerinella reveals isolation inconsistent with passive dispersal by ocean currents. PLoS One 9, e92148. doi:10.1371/journal.pone.0092148